| Geometric Issues in Protein Molecules | |
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Sanghun Jeong, Ku-Jin Kim, “Contact Curve Based Simulation of Side Chains from Two Amino Acids in a Protein Molecule,” COMSIT, 29th Nov – 1st Dec, 2016 in Krabi, Thailand, Dec. 2016. |
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Byungjoo Kim, Jung Eun Lee, Young J. Kim, Ku-Jin Kim, “GPU Accelerated Finding of Channels and Tunnels for a Protein Molecule,” International Journal of Parallel Programming, vol. 44, pp. 87-108, January 2016. |
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U Deok Seo, Yoo-Joo Choi, Ku-Jin Kim, “Updating Channel Adjacent Amino Acids for a Flexible Protein Molecule (poster),” The Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics, Pages 472-473, September 9-12, 2015, Atlanta, Georgia, USA. |
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Yukyeong Kim, Ku-Jin Kim, “Computation of a Bounding Volume Hierarchy for a Flexible Amino Acid,” Proceed. of the 2014 International Conference on Bioinformatics & Computational Biology, BIOCOMP’14, 24th July 2014 (poster presentation). |
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U Deok Seo, Ku-Jin Kim, “Contour Generation for a Depth Image,” Proceed. of the 2014 International Conference on Bioinformatics & Computational Biology, BIOCOMP’14, 24th July 2014 (poster presentation). |
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Byungjoo Kim, Ku-Jin Kim, “Computing the convex hull for a set of spheres on a GPU,” Proceedings of VRCAI 2012 (poster abstract), 12.2-4, Singapore, 2012, pp. 345. |
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Byungjoo Kim, Ku-Jin Kim, Joon-Kyung Seong, “GPU Accelerated Molecular Surface Computing,” Applied Mathematics & Information Sciences, vol.6, no.1S, pp.185S- 194S, January 2012. |
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Joon-Kyung Seong, Nakhoon Baek, Ku-Jin Kim, “Real-time approximation of molecular interaction interfaces Based on Hierarchical Space Decomposition,” Computer-Aided Design, vol.43, no.12, 1598-1605, Dec. 2011 |
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Byungjoo Kim, Ku-Jin Kim, Ji-Hoon Choi, Nakhoon Baek, Joon-Kyung Seong, Yoo-Joo Choi, “Finding surface atoms of a protein molecule on a GPU,” Proceedings of SIGGRAPH Asia 2011 (Poster), 2011. |
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Ku-Jin Kim, Jung-Eun Lee, Nakhoon Baek, “Voronoi diagram computation for protein molecules using graphics hardware,” ACM SIGGRAPH (poster), 2010 |
| Surface and Surface Intersections | |
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Ku-Jin Kim, “Circles in Torus-Torus Intersection,” Journal of Computational and Applied Mathematics, vol. 236, no. 9, 2387- 2397, March 2012. |
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Kwanhee Lee, Joon-Kyung Seong, Ku-Jin Kim, Sung Je Hong, “Minimum Distance between Two Sphere-Swept Surfaces,” Computer-Aided Design, Vol.39, No. 6, pp.452-459, June 2007. |
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J.-K. Seong, K.-J. Kim, M.-S. Kim, G. Elber, R. R. Martin, “Intersecting a Freeform Surface with a General Swept Surface,” Computer-Aided Design (ISSN: 0010-4485 Imprint: ELSEVIER), Vol.37, No.5, pp.473-483, April 2005. |
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K.-J. Kim, “Minimum Distance between a Canal Surface and a Simple Surface,” Computer-Aided Design, Vol.35, No.10, pp.871-879, September 2003. |
| Characteristic Curves on a Surface | |
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Joon-Kyung Seong, Ku-Jin Kim, Myung-Soo Kim, Gershon Elber, “Perspective Silhouette of a General Swept Volume,” The Visual Computer, Vol. 22, No. 2, pp. 109-116 , 7 Feb. 2006 |
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K.-J. Kim and N.-H. Baek, “Fast extraction of polyhedral model silhouettes from moving viewpoint on curved trajectory,” Computers and Graphics (ISSN: 0097-8493), Vol.29, No.3, pp.393-402, June 2005. |
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K.-J. Kim and I.-K. Lee, “The Perspective Silhouette of a Canal Surface,” Computer Graphics Forum, Vol. 22, No.1, pp.15-22, April 2003 |
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K.-J. Kim and I.-K. Lee, “Computing Isophotes of Surface of Revolution and Canal Surface”, Computer-Aided Design, Vol.35, No.3, pp. 215-223, March 2003. |
| Computer-Aided Design | |
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K.-J. Kim, E. Sacks, and L. Joskowicz, “Kinematic Analysis of Spatial Fixed-Axes Higher Pairs Using Configuration Spaces,” Computer-Aided Design, Vol.35, No.3, pp.279-291, March 2003. |
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C. M. Hoffmann and K.-J. Kim, “Towards Valid Parametric CAD Models,” Computer-Aided Design, vol.33, no.1, pp. 81- 90, January 2001. |